HPC Sample Code and Scripts

On the CQ University HPC systems, a number of of sample code and scripts have been developed to assist users using the HPC system.

All sample scripts can be found at on the HPC systems at: /apps/samples/

The sample code and scripts include:

Script files that demonstrate submitting multiple jobs whilst passing different input variables for each job;

Current samples

/apps/samples/hpc-training:
hello.sh

/apps/samples/job-arrays:
multi-job multi-var

/apps/samples/job-submission:
input job_submit.pbs

/apps/samples/matlab:
hello.m matlab-test.sh

/apps/samples/multi-submit:
hello.exe multi-submit.sh

/apps/samples/PBS:
example.pbs mathemathica.pbs matlab.pbs R.pbs

/apps/samples/sys-files:
gnome-terminal.desktop log-strudel-node-usage remove-old-vnc-pids.sh vnc-log-delete.sh
xstartup-backup-23.01.2018 xstartup-old-isaac-newton hpcusers.txt log-strudel-usage
startup-checker.sh xstartup xstartup-backup-25.01.2018
bash-4.2$

Information on various script can be found at:

• Sample PBS Submission Script
• MATLAB Sample Scripts
• Mathematica Sample Scripts
• Multiple Job Submission
• Multiple Run Job Submisson
• PBS Job Array Submission
• R Sample Scripts

It is hoped that these sample scripts and programs will assist you to develop better MATLAB programs and assist to increase your research output, by being able to submit many jobs in parallel.